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Depending on what you are doing with them, the drives can work just fine running through the USB ports, which can be faster than hard drives in most cases. I have my content - which is like 90% of the data space - on USB hard drives and the databases to manage them on the internal M.2 drive. Works fine for something like Immich.
I know USB drives work well enough for most people, but I had never-ending issues when I was first trying to set up my media server. All of my problems went away once I connected my drives internally. Well, not all of my problems, just my hard drive related ones. :)