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The atl1c driver is the main suspect — it's been flaky for over a decade, and "negotiates 100 Mb/s then freezes" is its signature failure mode. Things to try, roughly in order:
pcie_aspm=offon the kernel cmdline; also trysudo ethtool --set-eee enp1s0 eee offif EEE is advertised.sudo ethtool -s enp1s0 speed 1000 duplex full autoneg off. If it holds at gigabit, you've confirmed it's the autoneg path. (Revert afterward — forced mode without autoneg breaks link on some switches.)Honest recommendation: this is a 15-year-old board. A ~$10 Intel NIC (i210/i211, or a used Intel PCIe card) with the rock-solid igb/igc driver will save you more time than debugging atl1c ever will — it'll negotiate gigabit all day.
Did you really have to copy two slightly different AI answers into this thread?