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If you have the room, why not go full ATX? More compatibility with available parts and room for future upgrades! Drives, GPUs, NICs, HBAs etc.
Also usually cheaper components.
ITX boards tend to cost more than bigger boards, you're limited to one slot, and usually the cases are super limited in size for heatsinks or other stuff.
There's a few options now, but you can get Intel N100 ITX boards Like this one from ASUS with a soldered on N100 CPU for the cost of a normal motherboard.
If its just a NAS, and I do recommend having a separate Just a NAS, that CPU fucks hard.